Bioinformatics: RNA-Seq/Differential expression in Bash & R!
Carry out a RNA-seq pipeline in the command line in Colab and use R to carry out differential expression & GO analysis!
3.73 (11 reviews)
96
students
4.5 hours
content
Nov 2022
last update
$39.99
regular price
What you will learn
The basics of Next Generation Sequencing and how it can be used for Differential gene expression analysis via RNA sequencing.
How to use RNA-seq tools from the command line. Examples done in Google Colab so everyone can follow.
Preprocessing RNA sequencing data.
Aligning the reads to a genome using Salmon.
Transcript quantification.
Differential Expression in R.
Gene ontology and Pathway analysis in R.
Ultimately understand how technologies like RNA sequencing could be used to identify specific genes that can cause certain conditions.
An explanation of how you would upload your data to a server to run a big job.
Related Topics
4861196
udemy ID
9/1/2022
course created date
12/23/2022
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